Testing

Instructions to run tests for the genomesizeR package.

Prerequisites - Install devtools and testthat:

install.packages("devtools")
install.packages("testthat")

Download reference data archive and place in inst/extdata/, e.g.:

inborutils::download_zenodo("10.5281/zenodo.13733183", path="inst/extdata/")

Run all tests

devtools::test()

Run the three E2E tests for each method

devtools::test_file("tests/testthat/test_estimate_genome_size_bayesian_small_e2e.R")
devtools::test_file("tests/testthat/test_estimate_genome_size_lmm_small_e2e.R")
devtools::test_file("tests/testthat/test_estimate_genome_size_weighted_mean_small_e2e.R")

Notes - All tests require the reference archive genomesizeRdata_v*.tar.gz in inst/extdata/.